Humboldt-Universität zu Berlin - Mathematisch-Naturwissenschaftliche Fakultät - Wissensmanagement in der Bioinformatik


Events organized or co-organized by members of our group.


  • 23.10.2012, research seminar. Anastasios Gounaris, University of Thessaloniki: Distributed Data Management: Optimization and Adaptivity Issues
  • 16.7.2012, research seminar. Pablo Mendes, Freie Universität Berlin: Concept Recognition and Disambiguation
  • 2.7.2012, guest lecture. Martin Althaus, Cap Gemini: Datenintegration in der Praxis
  • 11.6.2012, research seminar. Feiyu Xu, DFKI Berlin: Parse Reranking for the Domain-Adaptation of Relation Extraction
  • 16.3.2012, research seminar. Christian Bölling, Charite: Representation of Metabolic Pathways
  • 23.1.2012, guest lecture. Nils Blüthgen, Charite Berlin: Transcription Factor Networks
  • 10.1.2012, guest lecture. Hr. Dresing, Oracle: Oracle Data Integrator


  • 22.11.2011, guest lecture. Stefan Edlich, Beuth Hochschule Berlin: NoSQL und NewSQL
  • 5.10.2011, research seminar. Anne-Lyse Minard, LIMSI Orsay: Information extraction from specialized domain
  • 2.8.2011, research seminar: Saeedeh Momtazi, HPI Potsdam: Bridging the Vocabulary Gap between Questions and Answers Sentences in Question Answering Systems
  • 5.7.2011, research seminar: Kai Kugler, Innsbruck: Developments in Integrative Network Biology
  • 30.5.2011, research seminar: Dr. Schröder, Fraunhofer IBMT Potsdam: The CRIP Privacy Regime: A Model Concept for Networking Biobanks
  • 18.3.2011, research seminar: Marie Gebhardt, MDC Berlin-Buch: Improving the prediction of miRNA function by integration of miRNA target predictions and gene regulatory networks
  • 17.2.2011, research seminar: Michael Hartung, Uni Leipzig: Evolution of Ontologies in the Life Sciences
  • 27.1.2011, guest lecture: Felix Naumann, HPI Potsdam: Linked Open Govermental Data
  • 24.1.2011, research seminar: Ioana Manulescu, INRIA: Warehousing Web Data


  • 16.12.2010, research seminar: Miguel Andrade, MDC Buch. Computational approaches to the study of gene function
  • 14.12.2010, guest lecture: Dr. Andreas, HU Linguistik. An Introduction t Linguistics
  • 22.11.2010, research seminar: Mariana Lara Neves, Madrid. The Moara system for biomedical text mining
  • 4.11.2010, research seminar: Ekaterina Buyko, Uni Jena: tba
  • 18.10.2010, research seminar: Axel Rasche, MPI.MG Berlin: ARH - Alternative Splicing Robust Prediction by Entropy Complementing Differential Expression on Exon Arrays
  • 11.10.2010, research seminar: Wojciech Barczynski, SAP Research Dresden: Error detection in Information Extraction Results
  • 27.1.2010, guest lecture: Prof. Hans-Peter Herzel, HU Berlin und Charite: Prediction of Transcription Factor Binding Sites
  • 19.1.2010, research seminar: Conrad Plake, TU Dresden: tba
  • 8.1.2010, workshop: Managing and Curating Biological Pathways.


  • 15.12.2009, research seminar: Uwe Röhm, University of Sydney: BioSeqDB: Analyse großer DNA Datenbestände mittels deklarativer Anfragebearbeitung
  • 15.12.2009, research seminar: Hilmar Schuschel, Oracle: Anwendungsintegration mit Oracle am konkreten Beispiel
  • 11.12.2009, WBI Information Day: Research Topics.
  • 8.12.2009, research seminar: Roman Klinger, SCAI Bonn: Conditional Random Fields for Named Entity Recognition
  • 4.12.2009, research seminar: Marc Lohse, Max-Planck-Institute of Molecular Plant Phyiology, Potsdam: ROBIN
  • 26.11.2009, dissertation defense: Philip Groth: Knowledge management and Discovery for Genotype/Phenotype Data
  • 3.11.2009, research seminar: Florian Batke, Uni Tübingen: Mayday - Visual Analytics for Expression Data
  • 11.9.2009, dissertation defense: Jörg Hakenberg: Mining Relations from the Biomedical Literature
  • 12.7.2009, research seminar: Ulf Brefeld, TU Berlin: Relationship Extraction from Text
  • 12.5.2009, Gong Show 2009.
  • 24.2.2009, research seminar: Jörg Hakenberg, Arizona State University: PTQL, the Parse Tree Query Language
  • 16.2.2009, research seminar: Falk Brauer, TU Dresden & SAP Research: Uncertainty in Named Entity Recognition
  • 5.2.2009, guest lecture: Alexander Löser, TU Berlin: Business Intelligence over Text
  • 15.1.2009, guest lecture: Pabst, Herrmann, Cap Gemini SD&M: Integrationsprojekte in der Praxis
  • 12.1.2009, research seminar: Anja Klein, SAP Research Dresden: Quality in Data Streams


  • 1.7.2008, guest lecture: Arne Brühning, Oracle AG: Oracle Text
  • 20.6.2008, research seminar: Prof. Johannes Gehrke, U Cornell: Scaling Games to Epic Dimensions
  • 19.6.2008, research seminar: Prof. Johannes Gehrke, U Cornell: Efficient Streaming in Sensor Networks
  • 19.6.2008, guest lecture: Prof. Anke Lüdeling, HU Berlin: Introduction into Computational Linguistics
  • 17.6.2008, Gong Show 2008.
  • 15.5.2008, research seminar: Michael Lappe, MPIMG: Systems Biology = Networks + Structures
  • 11.4.2008 - 12.4.2008, Workshop on Information Integration Methods, Architectures, and Systems (IIMAS 2008, co-located with ICDE 2008), with Jens Dittrich, ETH Zurich, Bertram Ludaescher, University of California in Davis,  David Maier, Portland State University,Louiqa Raschid, University of Maryland
  • 24.3.2008 - 28.3.2008, Dagstuhl-Seminar "Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives" (with Michael Ashburner, University of Cambridge andDr. Rebholz-Schuhmann, European Bioinformatics Institute).
  • 5.2.2008, guest lecture, Prof. Antje Krause, FH Bingen: Clustering Protein Sequences.
  • 22.1.2008, guest lecture, Dr. Schuchardt, MicroDiscovery GmbH: Reconstruction of Regulatory Networks.


  • 4.12.007, research seminar, Heiko Müller, University of Edinburgh: Archiving Scientific Data
  • 1.11.007, METRIK-Seminar: Katharina Hahn, FU Berlin: Supporting Transactional Cooperation in Mobile ad-hoc Networks
  • 19.10.2007, research seminar, Thorsten Vitt, TU Darmstadt: TextGrid - Integration in den Textwissenschaften
  • 11+12.10.2007, Workshop des Graduiertenkollegs METRIK: Data and Service Management in Self-Organizing Systems
  • 31.7.2007, research seminar, Peter Siniakov, Freie Universität Berlin: GROPUS: Adaptive Information Extraction from Text.
  • 19.7.2007, research seminar, Prof. Klemens Böhm, Universität Karlsruhe: Towards Effective and Efficient Behavior-based Trust Models.
  • 26.6.2007, guest lecture, Richard Eberl-Koschny, PSI AG: Data Warehouse Projekte in der Praxis.
  • 26.6.2007, research seminar, Chris Bizer, FU Berlin: Neue Entwicklungen im Semantic Web.
  • 30.5.2007, BCB Seminar, Humboldt Kabinett, 16.00 - 18.00 Uhr.
  • 29.5.2007, research seminar, Stephan Gottwald, PSI AG: Informationsmanagement in Krisensituationen.
  • 4.5.2007, Gong Show 2007.
  • 27.3.2007, research seminar, Thomas Kabisch, TU Berlin: Modellierung und Lernen von Web-Interface-Patterns.
  • 20.3.2007, research seminar, Toralf Kirsten, IZBI Leipzig: DWH und Mapping-basierte Datenintegration in der Bioinformatik.
  • 6.2.2007, research seminar, Kerstin Terfloth, FU Berlin: FenceNet.
  • 1.2.2007, guest lecture, Herr Kaselowski, SAS Deutschland: Der SAS Integration Server.
  • 16.1.2007, guest lecture, Prof. Felix Naumann, HPI Potsdam: Schema Matching.