Humboldt-Universität zu Berlin - Mathematisch-Naturwissenschaftliche Fakultät - Wissensmanagement in der Bioinformatik

Managing and curating Biological Pathways


8.1.2010 10:00-15:00


10115 Berlin
Institute for Theoretical Biology
Invalidenstr 43
Hörsaal 12


10:00 - 12:00

  • Christian Bölling, Charité Medical School Berlin
    Reconstruction and analysis of metabolic networks of hepatocytes and other cell types: concepts, requirements and perspectives
  • Pawel Durek, Humboldt-Universität zu Berlin
    Reconstruction of intra cellular signaling and regulatory networks in the context of colon cancer.
  • Wolfram Liebermeister, Humboldt-Universität zu Berlin
    Processing of SBML models based on semantic annotations
  • Thomas Handorf, Humboldt-Universität zu Berlin
    NetworkCurator: A tool for the curation of complex signaling networks

12:00 - 13:00

  • Lunch

13:00 - 15:00

  • Philippe Thomas, Humboldt-Universität zu Berlin
    State-of-the-art in literature-based pathway reconstruction
  • Stefan Kempa, Max Delbrück Center for Molecular Medicine
    Managing multi-'omics' data
  • Atanas Kamburov, MPI-MG
    ConsensusPathDB: A database for integrating functional interaction networks
  • Patrick May, Max Planck Institute for Molecular Plant Physiology
    ChlamyCyc: An integrative systems biology database and web-portal for Chlamydomonas reinhardtii.

15:00 - 15:30

  • Discussion

Contact: Philippe Thomas [thomas (at)]