Humboldt-Universität zu Berlin - Mathematisch-Naturwissenschaftliche Fakultät - Wissensmanagement in der Bioinformatik

Datenintegration am Beispiel der Bioinformatik - Literatur

AHK+95
Y. Arens, R. Hull, R. King and e. al. Reference Architecture for the Intelligent Integration of Information; Version 2.0 (DRAFT). 1995.

AVB01
F. Achard, G. Vaysseix and E. Barillot. XML, bioinformatics and data integration. Bioinformatics, 17 (2): 115-25, 2001.

Bak96
S. Baker. CORBA and Databases - Do you really need both ? Object Expert, May: 1996.

BBB+98
P.G. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton and R. Stevens. TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. 6th Int. Conf. on Intelligent Systems for Molecular Biology, Montreal, Canada, 1998.

BGB+99
S. Baker, C. Goble, S. Bechhofer, N. Paton, R. Stevens and A. Brass. An Ontology for Bioinformatics Applications. Bioinformatics, 15 (6): 510-520, 1999.

BLN86
C. Batini, M. Lenzerini and S.B. Navathe. A Comparative Analysis of Methodologies for Database Schema Integration. ACM Computing Surveys, 18 (4): 323-364, 1986.

Bor95
A. Borgida. Description Logic in Data Management. IEEE Transactions on Knowledge and Data Engineering, 7 (5): 671-682, 1995.

CD97
U. Chaudhuri and U. Dayal. An Overview of Data Warehousing and OLAP Technology. SIGMOD Record, 26 (1): 65-74, 1997.

CKM+98
I.M. Chen, A.S. Kosky, V.M. Markowitz, E. Szeto and T. Topaloglou. Advanced query mechanisms for biological databases. 6th Int. Conf. on Intelligent Systems for Molecular Biology, 1998.

CM95
I.A. Chen and V.M. Markowitz. An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools. Information Systems, 20 (5): 393-418, 1995.

Con97
S. Conrad. Föderierte Datenbanksysteme: Konzepte der Datenintegration. Springer Verlag, 1997.

Cou99
T. Coupaye. Wrapping SRS with CORBA: from textual data to distributed objects. Bioinformatics, 15 (4): 333-338, 1999.

DD99
R. Domenig and K.R. Dittrich. An Overview and Classification of Mediated Query Systems. SIGMOD Record, 28 (3): 1999.

EKL01
B.A. Eckman, A.S. Kosky and L.A. Laroco, Jr. Extending traditional query-based integration approaches for functional characterization of post-genomic data. Bioinformatics, 17 (7): 587-601, 2001.

EUA96
T. Etzold, A. Ulyanov and P. Argos. SRS: Information Retrieval System for Molecular Biology Data Banks. Methods in Enzymology, 266: 114-128, 1996.

Gel98
W.M. Gelbart. Databases in Genomic Research. Science, 282: 659-661, 1998.

GG95
N. Guarino and P. Giaretta. Ontologies and Knowledge Bases: Towards a Terminological Clarification. In N. J. I. Mars (ed), Towards Very Large Knowledge Bases, IOS Press, Amsterdam, 1995.

GO01
T. GeneOntology Consortium. Creating the gene ontology resource: design and implementation. Genome Research, 11 (8): 1425-33, 2001.

GSB+01
C. Goble, R. Stevens, S. Bechhofer, G. Ng, S. Bechhofer, N. Paton, S. Baker, M. Peim and A. Brass. Transparent Access to Multiple Bioinformatics Information Sources. IBM Systems Journal, 40 (2): 532-551, 2001.

GSSC96
M. Garca-Solaco, F. Saltor and M. Castellanos. Semantic Heterogeneity in Multidatabase Systems. In O. Bukhres and A. K. Elmagarmid (ed), Object-Oriented Multidatabase Systems - A Solution for Advanced Applications, Prentice Hall, 1996.

HGM95
J. Hammer, H. Garcia-Molina, J. Widom, W. Labio and Y. Zhuge. The Stanford Data Warehousing Project. IEEE Quarterly Bulletin on Data Engineering; Special Issue on Materialized Views and Data Warehousing, 18 (2): 41-48, 1995.

HKR+00
L.M. Haas, P. Kodali, J. Rice, P.M. Schwarz and W.C. Swope. Integrating Life Sciences Data - With a Little Garlic. IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000.

HKWY97
L.M. Haas, D. Kossmann, E.L. Wimmers and J. Yang. Optimizing Queries across Diverse Data Sources. 23rd Conference on Very Large Database Systems, Athens, Greece, 1997.

HSK+01
L.M. Haas, P.M. Schwarz, P. Kodali, E. Kotlar, J. Rice and W.C. Swope. DiscoveryLink: A System for Integrated Access to Life Sciences Data Sources. IBM Systems Journal, 40 (2): 489-511, 2001.

Karp96
P.D. Karp. A Strategy for Database Interoperation. Journal of Computational Biology, 2 (4): 573-583, 1996.

KCGS95
W. Kim, I. Choi, S. Gala and M. Scheevel. On Resolving Schematic Heterogeneity in Multidatabase Systems. In W. Kim (ed), Modern Database Systems, ACM Press, Addison-Wesley Publishing Company, 1995.

Ken91
W. Kent. The Breakdown of the Information Model in Multi-Database Systems. SIGMOD Record, 20 (4): 10-15, 1991.

Let00
S. Letovsky. Molecular Biology Databases. Kluwer Academic Publishers, 2000.

MCK97
V.M. Markowitz, I.-M.A. Chen and A.S. Kosky. Exploring Heterogeneous Molecular Biology Databases in the Context of the Object-Protocol Model. In S. Suhai (ed), Theoretical and Computational Genome Research, Plenum Press, 1997.

MEK+00
R. McEntire, P.D. Karp, N.F. Abernethy, D. Benton, G. Helt, M. DeJongh, R. Kent, A.S. Kosky, S. Lewis, D. Hodnett, E. Neumann, F. Olken, D. Pathak, P. Tarczy-Hornoch, L. Toldo and T. Topaloglou. An Evaluation of Ontology Exchange Languages for Bioinformatics. 8th Int. Conf. on Intelligent Systems for Molecular Biology, La Jolla / San Diego, CA, USA, 2000.

SADD+96
M.-C. Shan, R. Ahmed, J. Davis, W. Du and W. Kent. Pegasus: A Heterogeneous Information Management System. In W. Kim (ed), Modern Database Systems, ACM Press, Addison-Wesley, 1995.

SGBH02
R. Stevens, C. Goble, I. Horrocks and S. Bechhofer. Building a bioinformatics ontology using OIL. IEEE Transactions on Information Technology in Biomedicine, 6 (2): 135-41, 2002.

SGHB02
R. Stevens, C. Goble, I. Horrocks and S. Bechhofer. OILing the way to machine understandable bioinformatics resources. IEEE Transactions on Information Technology in Biomedicine, 6 (2): 129-34, 2002.

SL90
A. Sheth and J.A. Larson. Federated Database Systems for Managing Distributed, Heterogeneous and Autonomous Databases. ACM Computing Survey, 22 (3): 183-236, 1990.

Vos97
G. Vossen. The CORBA Specification for Cooperation in Heterogeneous Information Systems. 1st Workshop on Cooperative Information Systems; LNCS 1202, Kiel, Germany, 1997.

Wid95
J. Widom. Research Problems in Data Warehousing. 4th International Conference on Information and Knowledge Management, Baltimore, Maryland, 1995.

Wie92
G. Wiederhold. Mediators in the Architecture of Future Information Systems. IEEE Computer, 25 (3): 38-49, 1992.

Wie94
G. Wiederhold. Interoperation, Mediation and Ontologies. Int. Symposium on 5th Generation Computer Systems; Workshop on Heterogeneous Cooperative Knowledge-Bases, Tokyo, Japan, 1994.

WRR+00
L. Wang, P. Rodriguez-Tome, N. Redaschi, P. McNeil, A. Robinson and P. Lijnzaad. Accessing and distributing EMBL data using CORBA (common object request broker architecture). Genome Biology, 1 (5): 2000.

ZLAE00
E.M. Zdobnov, R. Lopez, R. Apweiler and T. Etzold. The EBI SRS Server - Recent Developments. Bioinformatics, 18 (2): 368-373, 2000.