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Humboldt-Universität zu Berlin - Mathematisch-Naturwissenschaftliche Fakultät - Wissensmanagement in der Bioinformatik

Wissensmanagement in der Bioinformatik

Prof. Dr. Ulf Leser


  • 22.11.2015: Five open PhD positions in the DFG research training group SOAMED, starting 1. April 2016.
  • 28.10.2015: We are happy to announce a first release of our scalable scientific workflow engine SaasFee.
  • 4.6.2015: Our 2008 paper on "Querying Distributed RDF Data Sources with SPARQL" (Quilitz and Leser) wins the seven years most influential paper award at ESWC 2015.
  • 23.4.2015: The German Ministry for Economy (BMWi) funds a new project on scalable patent mining (with Averbis GmBH)

Für Studenten



  • Running projects
  • Finished projects
  • Software and downloads
  • Finished dissertations in the group
  • Events organized by the group
  • Slides from our ICDE 2011 tutorial on Next Generation Data Integration for the Life Sciences
  • All publications; latest:
    • Gohlke et al.: CancerResource—updated database of cancer-relevant proteins, mutations and interacting drugs, NAR
    • Hakenberg et al.: Integrating 400 million variants from 80,000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts, BMC Bioinformatics
    • Wandelt and Leser: Sequence factorization with multiple references, PLOS ONE
    • Chondrogiannis et al. Alternative Routing: k-Shortest Paths with Limited Overlap, SIGSPATIAL