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Humboldt-Universität zu Berlin - Mathematisch-Naturwissenschaftliche Fakultät - Wissensmanagement in der Bioinformatik

Wissensmanagement in der Bioinformatik

Prof. Dr. Ulf Leser




    • 11.11.2021: Our WBI team achieved the 1st rank in the BC7 DrugProt competition for extracting drug - protein associations from scientific articles - among 30 participating teams. Congratulations to Leon, Mario, Sam, Fabio, and Christoph.
    • 20.10.2021: An was wir forschen: Knowledge Management for Precision Medicine
    • 05.10.2021: Unser Lehrprogramm für das Wintersemester 2021 / 2022 ist online.
    • 22.09.21: Our poster on "Transcriptomic deconvolution of neuroendocrine neoplasms predicts clinically relevant characteristics" by Raik Otto et al. won the 1st price at the eMED conference on Systems Medicine.
    • 01.08.2021: FONDA opens a second W1-professorship in "Distributed Computing". For details, visit the FONDA news page.
    • 16.03.2021: Our contribution to the BioNLP 2021 shared task on Question Summarization achieved a superb second position among 23 submissions. Congratulations especially to Mario and Leon.
    • 07.01.2021: Was wir forschen: Schnelle Erdbebenwarnung mit künstlicher Intelligenz
    • 29.05.2020: The German Research Council has approved funding of the Collaborative Research Center (CRC) 1404 "FONDA - Foundations of Workflows for Large-Scale Scientific Data Analysis" (see press release.
    • 2.10.2018: Interview mit Prof. Leser (auf Deutsch) zur Frage KI in der Krebstherapie.
    • 03.05.2018: An was wir forschen: Suchmaschinen für die personalisierte Onkologie


    Für Studenten



    • Running projects
    • Finished projects
    • Software and downloads
    • Finished dissertations in the group
    • All publications; latest:
      • Weber et al. Humboldt@DrugProt: Chemical-Protein Relation Extraction with Pretrained Transformers and Entity Descriptions, BioCreative 7
      • Leser et al.: The Collaborative Research Center FONDA, DASP
      • Weber et al. Extend, don’t rebuild: Phrasing conditional graph modification as autoregressive sequence labelling, EMNLP
      • Detjen et al. Elevated Flt3L predicts long-term survival in patients with high-grade gastroenteropancreatic neuroendocrine neoplasms, Cancers.