Humboldt-Universität zu Berlin - Mathematisch-Naturwissenschaftliche Fakultät - Wissensmanagement in der Bioinformatik

Prof. Dr. Ulf Leser

News

• 11.11.2021: Our WBI team achieved the 1st rank in the BC7 DrugProt competition for extracting drug - protein associations from scientific articles - among 30 participating teams. Congratulations to Leon, Mario, Sam, Fabio, and Christoph.
• 20.10.2021: An was wir forschen: Knowledge Management for Precision Medicine
• 05.10.2021: Unser Lehrprogramm für das Wintersemester 2021 / 2022 ist online.
• 22.09.21: Our poster on "Transcriptomic deconvolution of neuroendocrine neoplasms predicts clinically relevant characteristics" by Raik Otto et al. won the 1st price at the eMED conference on Systems Medicine.
• 01.08.2021: FONDA opens a second W1-professorship in "Distributed Computing". For details, visit the FONDA news page.
• 16.03.2021: Our contribution to the BioNLP 2021 shared task on Question Summarization achieved a superb second position among 23 submissions. Congratulations especially to Mario and Leon.
• 07.01.2021: Was wir forschen: Schnelle Erdbebenwarnung mit künstlicher Intelligenz
• 29.05.2020: The German Research Council has approved funding of the Collaborative Research Center (CRC) 1404 "FONDA - Foundations of Workflows for Large-Scale Scientific Data Analysis" (see press release.
• 2.10.2018: Interview mit Prof. Leser (auf Deutsch) zur Frage KI in der Krebstherapie.
• 03.05.2018: An was wir forschen: Suchmaschinen für die personalisierte Onkologie

 

Für Studenten

• Alle Lehrveranstaltungen des Lehrstuhls
• Offene, laufende und abgeschlossene (2021, 2020, 2019, 2018, früher) Studien- und Diplomarbeiten
  • Best thesis award 2018, L. Weber
  • Best thesis award 2016, M. Sänger
  • Best thesis award 2013, T. Rocktäschel
• Lehrbuch Informationsintegration (inklusive Folien und Errate).
• Auswertung der Studentenbefragung vom Dezember 2004

 

Research

• Running projects
• Finished projects
• Software and downloads
• Finished dissertations in the group
• All publications; latest:
  • Weber et al. Humboldt@DrugProt: Chemical-Protein Relation Extraction with Pretrained Transformers and Entity Descriptions, BioCreative 7
  • Leser et al.: The Collaborative Research Center FONDA, DASP
  • Weber et al. Extend, don’t rebuild: Phrasing conditional graph modification as autoregressive sequence labelling, EMNLP
  • Detjen et al. Elevated Flt3L predicts long-term survival in patients with high-grade gastroenteropancreatic neuroendocrine neoplasms, Cancers.