Humboldt-Universität zu Berlin - Mathematisch-Naturwissenschaftliche Fakultät - Wissensmanagement in der Bioinformatik

Seminar Verwandtschaft und Abstammung in Zeichenketten - Literatur

[BD93]
Bandelt, H.-J. and Dress, A.W.M., A relational approach to split decomposition. In: Opitz, O. and Lausen, B. and Klar, R., Information and Classification, pp. 123-131. Springer, Berlin 1993

[BV62]
Bergsland, K. & Vogt, H. On the validity of glottochronology. Curr. Anthropol. 3, 115 153 (1962).
[BB03]
Böckenhauer, Bongartz: "Algorithmische Grundlagen der Bioinformatik", Teubner 2003

[Bro01]
Brocchieri L.: " Phylogenetic inferences from molecular sequences: review and critique.", Theor Popul Biol. 2001 Feb;59(1):27-40.

[BJM91]
Brown, Peter F.; Lai, Jennifer C.; and Mercer, Robert L. (1991). Aligning sentences in parallel corpora. In Proceedings, 29th Annual Meeting of the Association for Computational Linguistics. Berkeley CA, June 1991, 169-176.
[BPM93]
Peter F. Brown, Stephen A. Della Pietra, Vincent J. Della Pietra, and Robert L. Mercer. The Mathematics of Statistical Machine Translation: Parameter estimation. Computational Linguistics, 19(2):263-311, 1993.

[Cam96]
Campbell, Lyle (1996) Phonetics and Phonology.  In HSK 12,  98-103

[Cam98]
Campbell, Lyle (1998) Historical Linguistics: An Introduction. Edinburgh University Press, Edinburgh

[Cou96]
Coulmas, Florian (1996) Orthographie und Graphemik. In HSK 12, 104-109

[DSO78]
Dayhoff, M.O., Schwartz, R.M. & Orcutt, B.C. (1978) "A model of evolutionary change in proteins." In "Atlas of Protein Sequence and Structure, vol. 5, suppl. 3," M.O. Dayhoff (ed.), pp. 345-352, Natl. Biomed. Res. Found., Washington, DC

[Dix97]
Dixon, Robert M. W. (1997) The Rise and Fall of Languages. Cambridge University Press, Cambridge

[EG02]
Ewens, Grant: "Statistical Methods in Bioinformatics", Springer 2002.

[FTB98]
Peter Forster, Alfred Toth, Hans-Jürgen Bandelt. Evolutionary Network Analysis of Word Lists: Visualising the Relationship between Alpine Romance Languages. Journal of Quantitative Linguistics, 1998, Vol. 5, No. 3, 174-187
[FTRR01]
Peter Forster, Antonio Torroni, Colin Renfrew and Arne Röhl: "Phylogenetic Star Contraction Applied to Asian and Papuan mtDNA Evolution", Molecular Biology and Evolution 18:1864-1881 (2001). Siehe auch: " Phylogenetische Netzwerke

[Gou02]
Gould, Stephen Jay (2002) The Structure of Evolutionary Theory. The Belknap Press of Harvard University Press, Cambridge, MA & London

[Gus97]
Gusfield: "Algorithms on Strings, Trees, and Sequences", Cambridge University Press, 1997

[HH92]
Henikoff, S. & Henikoff, J.G. (1992) " Amino acid substitution matrices from protein blocks" Proc. Natl. Acad. Sci. USA 89:10915-10919.

[HLR+01]
Herrgen, Joachim / Lameli, Alfred / Rabanus, Stefan / Schmidt, Jürgen Erich: Dialektalität als phonetische Distanz. Ein Verfahren zur Messung standarddivergenter Sprechformen. Marburg: Online-Publikation (2001).

[HR97]
Huelsenbeck JP, Rannala B.: " Phylogenetic methods come of age: testing hypotheses in an evolutionary context", Science. 1997 Apr 11;276(5310):227-32.

[Hu98]
Huson, D. H. SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14, 68 73 (1998).

[HSK12]
Goebl, Hans; Nelde, Peter H.; Starý, Zdenĕk; Wölck, Wolfgang (eds) (1996) Kontaktlinguistik. Contact Linguistics.Linguistique de contact. Handbücher zur Sprache und Kommunikationswissenschaft 12.1. Walter de Gruyter, Berlin

[HF03]
Hughes AL, Friedman R., "Genome-wide survey for genes horizontally transferred from cellular organisms to baculoviruses", Mol Biol Evol. 2003 Jun;20(6):979-87. Epub 2003 Apr 25

[JTT92]
Jones DT, Taylor WR, Thornton JM: "The rapid generation of mutation data matrices from protein sequences.", Comput Appl Biosci. 1992 Jun;8(3):275-82.

[Kes01]
Kessler, Brett (2001) The Significance of Word Lists. CSLI Publications, Stanford

[Kon03]
Kondrak, Gregorz (2003) Phonetic alignment and similarity. Computers and the Humanities 37(3), August 2003, pp. 273--291.
 
[KF95]
Kuhner MK, Felsenstein J.: " A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates.", Mol Biol Evol. 1994 May;11(3):459-68.

[KSS+03]
Annegret Kramer, Luisa Schubert, Jonas Schaefer, Lorenz Steinbock, Frank Holtrup: " Phylogenetische Bäume", Seminararbeit, Universität Heidelberg.

[MM03]
McMahon, A. and McMahon, R. (2003). "Finding Families: Quantitative Methods in Language Classification." Transactions of the Philosophical Society 10(1): 7-55.

[MMoJ]
McMahon, A. and McMahon, R. (o. J.). "Lies, Damned Lies, and Cladistics: Linguistic Classification and Genetic Correlations. Draft Version at http://crlc.anu.edu.au/arcling2/RAMcMahon.htm

[Muy96]
Muysken, Pieter (1996) Syntax . In  HSK12, 117-124

[NHK99]
Nerbonne, J., Heeringa, W. and Kleiweg, P. (1999). Edit Distance and Dialect Proximity. Book "Edit Distance and Dialect Proximity". Sankoff, D. and Kruskal, J., Addison Wesley Publications

[NS04]
John Nerbonne und Christine Siedle Dialektklassifikation auf der Grundlage Aggregierter Ausspracheunterschiede
Accepted to appear in: Zeitschrift für Dialektologie und Linguistik.

[NSW+03]
Nakhleh L, Sun J, Warnow T, Linder CR, Moret BM, Tholse A., "Towards the development of computational tools for evaluating phylogenetic network reconstruction methods", Pac Symp Biocomput. 2003;:315-26

[ON00]
Franz Josef Och, Hermann Ney. A Comparison of Alignment Models for Statistical Machine Translation. COLING '00: The 18th Int. Conf. on Computational Linguistics, pp. 1086-1090, Saarbrücken, Germany, July 2000. 

[RFZ03]
Rexova, K., Frynta, D. & Zrzavy, J. Cladistic analysis of languages: Indo-European classification based on lexicostatistical data. Cladistics 19, 120 127 (2003).

[RWT02]
Ringe, Don; Warnow, Tandy & Taylor, Ann (2002) Indo-European and Computational Cladistics. In: Transactions of the Philological Society 100, 59-129

[Sim98]
Sims-Williams, Patrick (1998) Genetics, linguistics, and prehistory: thinking big and thinking straight. In: Antiquity

[SK83]
Sankoff, D. and Kruskal, J., Eds. (1983). "Time Warps, String Edits, and Macromolecules". Reading, Mass., Addison Wesley Publications.

[Swa55]
Swadesh, Morris (1955) Towards Greater Accuracy in Lexicostatistic Dating. International Journal of American Linguistics 21, 121-137

[Tho01]
Thomason, Sarah (2001) Language Contact. An Introduction. Edinburgh University Press, Edinburgh

[VNT96]
S. Vogel, H. Ney, C. Tillmann. HMM-Based Word Alignment in Statistical Translation. Proc. Int. Conf. on Computational Linguistics, Kopenhagen, August 1996, pp. 836-841.

[Wil96]
Wilkins, David P. (1996) Morphology. In: HSK 12, 109-117