-1 |BT| (S1 (S (NP (NP (ADJP (FW In) (FW vivo)) (NNS studies)) (PP (IN of) (NP (NP (DT the) (NN activity)) (PP (IN of) (NP (NP (NP (CD four)) (PP (IN of) (NP (DT the) (NNS kinases)))) (, ,) (NP (NP (NP (NNP KinA) (, ,) (NNP KinC)) (, ,) (NP (NP (NN KinD)) (PRN (-LRB- -LRB-) (NP (NN ykvD)) (-RRB- -RRB-))) (CC and) (NP (NNP KinE))) (PRN (-LRB- -LRB-) (NP (CD ykrQ)) (-RRB- -RRB-))))))) (, ,) (VP (VBG using) (NP (NN abrB) (NN transcription)) (PP (IN as) (NP (NP (DT an) (NN indicator)) (PP (IN of) (NP (NN Spo0A~P) (NN level)))))) (, ,)) (VP (VBD revealed) (SBAR (IN that) (S (NP (NP (NN _PROT1_)) (CC and) (NP (NN _PROT2_))) (VP (VBD were) (ADJP (JJ responsible) (PP (IN for) (NP (NN _PROT_) (NN production)))) (PP (IN during) (NP (NP (DT the) (JJ exponential) (NN phase)) (PP (IN of) (NP (NN growth))))) (PP (IN in) (NP (NP (DT the) (NN absence)) (PP (IN of) (NP (NP (NN KinA)) (CC and) (NP (NN KinB)))))))))) (. .))) |ET|
+1 |BT| (S1 (S (NP (NP (ADJP (FW In) (FW vivo)) (NNS studies)) (PP (IN of) (NP (NP (DT the) (NN activity)) (PP (IN of) (NP (NP (NP (CD four)) (PP (IN of) (NP (DT the) (NNS kinases)))) (, ,) (NP (NP (NP (NNP KinA) (, ,) (NNP KinC)) (, ,) (NP (NP (NN KinD)) (PRN (-LRB- -LRB-) (NP (NN ykvD)) (-RRB- -RRB-))) (CC and) (NP (NNP KinE))) (PRN (-LRB- -LRB-) (NP (CD ykrQ)) (-RRB- -RRB-))))))) (, ,) (VP (VBG using) (NP (NN abrB) (NN transcription)) (PP (IN as) (NP (NP (DT an) (NN indicator)) (PP (IN of) (NP (NN Spo0A~P) (NN level)))))) (, ,)) (VP (VBD revealed) (SBAR (IN that) (S (NP (NP (NN _PROT1_)) (CC and) (NP (NN _PROT_))) (VP (VBD were) (ADJP (JJ responsible) (PP (IN for) (NP (NN _PROT2_) (NN production)))) (PP (IN during) (NP (NP (DT the) (JJ exponential) (NN phase)) (PP (IN of) (NP (NN growth))))) (PP (IN in) (NP (NP (DT the) (NN absence)) (PP (IN of) (NP (NP (NN KinA)) (CC and) (NP (NN KinB)))))))))) (. .))) |ET|
+1 |BT| (S1 (S (NP (NP (ADJP (FW In) (FW vivo)) (NNS studies)) (PP (IN of) (NP (NP (DT the) (NN activity)) (PP (IN of) (NP (NP (NP (CD four)) (PP (IN of) (NP (DT the) (NNS kinases)))) (, ,) (NP (NP (NP (NNP KinA) (, ,) (NNP KinC)) (, ,) (NP (NP (NN KinD)) (PRN (-LRB- -LRB-) (NP (NN ykvD)) (-RRB- -RRB-))) (CC and) (NP (NNP KinE))) (PRN (-LRB- -LRB-) (NP (CD ykrQ)) (-RRB- -RRB-))))))) (, ,) (VP (VBG using) (NP (NN abrB) (NN transcription)) (PP (IN as) (NP (NP (DT an) (NN indicator)) (PP (IN of) (NP (NN Spo0A~P) (NN level)))))) (, ,)) (VP (VBD revealed) (SBAR (IN that) (S (NP (NP (NN _PROT_)) (CC and) (NP (NN _PROT1_))) (VP (VBD were) (ADJP (JJ responsible) (PP (IN for) (NP (NN _PROT2_) (NN production)))) (PP (IN during) (NP (NP (DT the) (JJ exponential) (NN phase)) (PP (IN of) (NP (NN growth))))) (PP (IN in) (NP (NP (DT the) (NN absence)) (PP (IN of) (NP (NP (NN KinA)) (CC and) (NP (NN KinB)))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (NN Expression)) (PP (IN of) (NP (DT the) (ADJP (NN _PROT1_) (-LRB- _PROT1_) (NN _PROT1_) (-RRB- _PROT1_) (JJ -dependent)) (NN _PROT_) (NN gene)))) (VP (VBD depended) (PP (IN on) (NP (NN _PROT2_))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (NN Expression)) (PP (IN of) (NP (DT the) (ADJP (NN _PROT1_) (-LRB- _PROT1_) (NN _PROT1_) (-RRB- _PROT1_) (JJ -dependent)) (NN _PROT2_) (NN gene)))) (VP (VBD depended) (PP (IN on) (NP (NN _PROT_))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (NN Expression)) (PP (IN of) (NP (DT the) (ADJP (NN _PROT_) (-LRB- _PROT_) (NN _PROT_) (-RRB- _PROT_) (JJ -dependent)) (NN _PROT2_) (NN gene)))) (VP (VBD depended) (PP (IN on) (NP (NN _PROT1_))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (NN Production)) (PP (IN of) (NP (NP (NN _PROT1_)) (ADJP (NP (QP (RB about) (CD 1)) (NN h)) (JJR earlier) (PP (IN than) (NP (JJ normal))))))) (VP (VBZ does) (VP (VB affect) (NP (NP (NN _PROT2_)) (, ,) (SBAR (WHNP (WDT which)) (S (SBAR (WHADVP (WRB when)) (S (VP (VBN phosphorylated)))) (VP (VBZ is) (NP (NP (DT an) (NN activator)) (PP (IN of) (NP (JJ _PROT_) (NN transcription))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (NN Production)) (PP (IN of) (NP (NP (NN _PROT1_)) (ADJP (NP (QP (RB about) (CD 1)) (NN h)) (JJR earlier) (PP (IN than) (NP (JJ normal))))))) (VP (VBZ does) (VP (VB affect) (NP (NP (NN _PROT_)) (, ,) (SBAR (WHNP (WDT which)) (S (SBAR (WHADVP (WRB when)) (S (VP (VBN phosphorylated)))) (VP (VBZ is) (NP (NP (DT an) (NN activator)) (PP (IN of) (NP (JJ _PROT2_) (NN transcription))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (NN Production)) (PP (IN of) (NP (NP (NN _PROT_)) (ADJP (NP (QP (RB about) (CD 1)) (NN h)) (JJR earlier) (PP (IN than) (NP (JJ normal))))))) (VP (VBZ does) (VP (VB affect) (NP (NP (NN _PROT1_)) (, ,) (SBAR (WHNP (WDT which)) (S (SBAR (WHADVP (WRB when)) (S (VP (VBN phosphorylated)))) (VP (VBZ is) (NP (NP (DT an) (NN activator)) (PP (IN of) (NP (JJ _PROT2_) (NN transcription))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT1_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT2_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT2_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT1_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT2_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT1_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT1_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT2_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT2_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT1_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT2_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT1_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT1_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT2_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT1_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT2_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT1_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT2_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT_) (NN promoter)) (, ,) (PP (IN like) (NP (DT the) (NN _PROT1_) (NN promoter))) (, ,)) (VP (VBZ is) (VP (VBN believed) (S (VP (TO to) (VP (VB be) (VP (VBN recognized) (PP (IN by) (NP (NN _PROT_) (NN RNA) (NN polymerase)))))))) (, ,) (S (VP (VBG suggesting) (SBAR (IN that) (S (NP (NN _PROT_)) (VP (MD may) (VP (VB inhibit) (NP (NN _PROT2_) (NN activity)) (PP (ADVP (RB late)) (IN in) (NP (NN sporulation))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (PP (IN In) (NP (NP (DT the) (NN mother) (NN cell) (NN compartment)) (PP (IN of) (NP (JJ sporulating) (NNS cells))))) (, ,) (NP (NP (NN expression)) (PP (IN of) (NP (NP (DT the) (NN _PROT2_) (NN gene)) (, ,) (VP (VBG encoding) (NP (NP (DT the) (JJ earlier-acting) (NN sigma) (NN factor)) (, ,) (NP (NN sigmaE)) (, ,)))))) (VP (VBZ is) (ADVP (RB negatively)) (VP (VBN regulated) (PP (IN by) (NP (NP (DT the) (JJ later-acting) (NN sigma) (NN factor)) (, ,) (NP (NN _PROT1_))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (LST (-LRB- -LRB-) (LS i) (-RRB- -RRB-)) (NP (DT The) (NN finding) (SBAR (IN that) (S (NP (DT the) (NN _PROT2_) (NN operon)) (VP (VBZ is) (PP (IN under) (NP (NN _PROT1_) (NN control))))))) (VP (VBZ indicates) (SBAR (IN that) (S (NP (NP (DT the) (NN elimination)) (PP (IN of) (NP (JJ multidrug) (NNS compounds)))) (VP (MD might) (VP (VB be) (NP (NP (DT a) (JJ new) (NN function)) (PP (IN in) (NP (JJ multiple) (NN stress) (NN resistance)))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (DT The) (NN _PROT2_) (NN gene)) (VP (MD might) (VP (VB belong) (PP (TO to) (NP (NP (DT the) (VBG increasing) (NN number)) (PP (IN of) (NP (NP (JJ _PROT1_) (NNS genes)) (SBAR (WHNP (WP$ whose) (NNS orthologues)) (S (VP (VBP are) (PP (IN under) (NP (NP (DT the) (NN control)) (PP (IN of) (NP (NP (NNS sigmas)) (PP (IN in) (NP (FW Escherichia) (FW coli))))))) (, ,) (S (VP (VBG indicating) (SBAR (IN that) (S (NP (DT both) (NNS regulons)) (VP (MD may) (VP (VBP fulfil) (NP (JJ similar) (NNS functions)))))))))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (NP (CD Three) (JJ new) (JJ _PROT1_) (NNS genes)) (PRN (-LRB- -LRB-) (NP (NP (NN _PROT2_)) (, ,) (NP (NN _PROT_)) (CC and) (NP (NN _PROT_))) (-RRB- -RRB-))) (VP (VBG encoding) (NP (NP (NNS proteins)) (PP (IN with) (NP (ADJP (RB still) (JJ unknown)) (NNS functions)))))) (VP (VBD were) (ADVP (RB also)) (VP (VBN described)))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (NP (CD Three) (JJ new) (JJ _PROT1_) (NNS genes)) (PRN (-LRB- -LRB-) (NP (NP (NN _PROT_)) (, ,) (NP (NN _PROT2_)) (CC and) (NP (NN _PROT_))) (-RRB- -RRB-))) (VP (VBG encoding) (NP (NP (NNS proteins)) (PP (IN with) (NP (ADJP (RB still) (JJ unknown)) (NNS functions)))))) (VP (VBD were) (ADVP (RB also)) (VP (VBN described)))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (NP (CD Three) (JJ new) (JJ _PROT1_) (NNS genes)) (PRN (-LRB- -LRB-) (NP (NP (NN _PROT_)) (, ,) (NP (NN _PROT_)) (CC and) (NP (NN _PROT2_))) (-RRB- -RRB-))) (VP (VBG encoding) (NP (NP (NNS proteins)) (PP (IN with) (NP (ADJP (RB still) (JJ unknown)) (NNS functions)))))) (VP (VBD were) (ADVP (RB also)) (VP (VBN described)))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (NP (CD Three) (JJ new) (JJ _PROT_) (NNS genes)) (PRN (-LRB- -LRB-) (NP (NP (NN _PROT1_)) (, ,) (NP (NN _PROT2_)) (CC and) (NP (NN _PROT_))) (-RRB- -RRB-))) (VP (VBG encoding) (NP (NP (NNS proteins)) (PP (IN with) (NP (ADJP (RB still) (JJ unknown)) (NNS functions)))))) (VP (VBD were) (ADVP (RB also)) (VP (VBN described)))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (NP (CD Three) (JJ new) (JJ _PROT_) (NNS genes)) (PRN (-LRB- -LRB-) (NP (NP (NN _PROT1_)) (, ,) (NP (NN _PROT_)) (CC and) (NP (NN _PROT2_))) (-RRB- -RRB-))) (VP (VBG encoding) (NP (NP (NNS proteins)) (PP (IN with) (NP (ADJP (RB still) (JJ unknown)) (NNS functions)))))) (VP (VBD were) (ADVP (RB also)) (VP (VBN described)))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (NP (CD Three) (JJ new) (JJ _PROT_) (NNS genes)) (PRN (-LRB- -LRB-) (NP (NP (NN _PROT_)) (, ,) (NP (NN _PROT1_)) (CC and) (NP (NN _PROT2_))) (-RRB- -RRB-))) (VP (VBG encoding) (NP (NP (NNS proteins)) (PP (IN with) (NP (ADJP (RB still) (JJ unknown)) (NNS functions)))))) (VP (VBD were) (ADVP (RB also)) (VP (VBN described)))) (. .))) |ET|
