+1 |BT| (S1 (S (S (NP (PRP$ Our) (NNS results)) (VP (VBP indicate) (SBAR (IN that) (S (NP (NP (DT the) (NN level)) (PP (IN of) (NP (NN _PROT2_) (NN level))) (PP (IN in) (NP (VBG outgrowing) (NNS spores)))) (VP (VBZ depends) (ADVP (RB mainly)) (PP (IN on) (NP (NN _PROT1_))) (, ,) (SBAR (IN because) (S (NP (NN sigB) (NNS mutants)) (VP (VBP show) (NP (NP (JJ normal) (NN KatX) (NN activity)) (PP (IN in) (NP (ADJP (ADJP (JJ dormant)) (CC and) (ADJP (JJ outgrowing))) (NNS spores)))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (ADVP (RB Therefore)) (, ,) (NP (NP (DT the) (JJ physiological) (NN role)) (PP (IN of) (NP (JJ _PROT1_) (NN _PROT2_) (NN expression)))) (VP (VBZ remains) (ADJP (JJ obscure)))) (. .))) |ET|
-1 |BT| (S1 (S (S (S (NP (NP (DT The) (QP (CD -10) (CC and) (CD -35)) (NNS sequences)) (PP (IN of) (NP (NP (DT the) (ADJP (ADJP (JJ _PROT1_)) (CC and) (ADJP (JJ _PROT2_))) (NNS promoters)) (PP (IN of) (NP (NN _PROT_)))))) (VP (VBP overlap))) (, ,) (CC and) (S (NP (NP (DT the) (JJ transcriptional) (NN start) (NNS points)) (VP (VBN used) (PP (IN by) (NP (NP (NN EsigmaB)) (CC and) (NP (NN EsigmaF)))))) (VP (VBP differ) (PP (IN by) (NP (QP (RB only) (CD one)) (NN nucleotide)))))) (. .))) |ET|
+1 |BT| (S1 (S (S (S (NP (NP (DT The) (QP (CD -10) (CC and) (CD -35)) (NNS sequences)) (PP (IN of) (NP (NP (DT the) (ADJP (ADJP (JJ _PROT1_)) (CC and) (ADJP (JJ _PROT_))) (NNS promoters)) (PP (IN of) (NP (NN _PROT2_)))))) (VP (VBP overlap))) (, ,) (CC and) (S (NP (NP (DT the) (JJ transcriptional) (NN start) (NNS points)) (VP (VBN used) (PP (IN by) (NP (NP (NN EsigmaB)) (CC and) (NP (NN EsigmaF)))))) (VP (VBP differ) (PP (IN by) (NP (QP (RB only) (CD one)) (NN nucleotide)))))) (. .))) |ET|
+1 |BT| (S1 (S (S (S (NP (NP (DT The) (QP (CD -10) (CC and) (CD -35)) (NNS sequences)) (PP (IN of) (NP (NP (DT the) (ADJP (ADJP (JJ _PROT_)) (CC and) (ADJP (JJ _PROT1_))) (NNS promoters)) (PP (IN of) (NP (NN _PROT2_)))))) (VP (VBP overlap))) (, ,) (CC and) (S (NP (NP (DT the) (JJ transcriptional) (NN start) (NNS points)) (VP (VBN used) (PP (IN by) (NP (NP (NN EsigmaB)) (CC and) (NP (NN EsigmaF)))))) (VP (VBP differ) (PP (IN by) (NP (QP (RB only) (CD one)) (NN nucleotide)))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (PRP We)) (VP (VBD demonstrated) (SBAR (IN that) (S (NP (NN _PROT2_)) (VP (VBZ is) (ADVP (RB also)) (NP (DT a) (JJ _PROT1_) (JJ general) (NN stress) (NN gene)) (, ,) (SBAR (IN since) (S (NP (PRP it)) (VP (VBZ is) (ADVP (RB strongly)) (VP (VBN induced) (PP (PP (IN by) (NP (NP (NN heat)) (, ,) (NP (NN salt)) (CC and) (NP (NN ethanol) (NN stress)))) (, ,) (CONJP (RB as) (RB well) (IN as)) (PP (IN by) (NP (NN energy) (NN depletion))))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT_) (NN gene)) (PP (IN of) (NP (FW Bacillus) (FW subtilis))) (, ,) (VP (VBG encoding) (NP (DT a) (JJ catabolic) (NN glutamate) (NN dehydrogenase))) (, ,)) (VP (VP (VBZ is) (VP (VBN transcribed) (PP (IN by) (NP (JJ _PROT1_) (NN RNA) (NN polymerase))))) (CC and) (VP (VBZ requires) (PP (IN for) (NP (NP (PRP$ its) (NN expression) (NN _PROT2_)) (, ,) (NP (NP (DT a) (NN member)) (PP (IN of) (NP (NP (DT the) (NN NtrC/NifA) (NN family)) (PP (IN of) (NP (NP (NNS proteins)) (SBAR (WHNP (WDT that)) (S (VP (VBP bind) (PP (TO to) (NP (NP (JJ enhancer-like) (NNS elements)) (, ,) (VP (VBN called) (S (NP (NP (JJ upstream) (NN activating) (NNS sequences)) (PRN (-LRB- -LRB-) (NP (NNS UAS)) (-RRB- -RRB-)))))))))))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT2_) (NN gene)) (PP (IN of) (NP (FW Bacillus) (FW subtilis))) (, ,) (VP (VBG encoding) (NP (DT a) (JJ catabolic) (NN glutamate) (NN dehydrogenase))) (, ,)) (VP (VP (VBZ is) (VP (VBN transcribed) (PP (IN by) (NP (JJ _PROT1_) (NN RNA) (NN polymerase))))) (CC and) (VP (VBZ requires) (PP (IN for) (NP (NP (PRP$ its) (NN expression) (NN _PROT_)) (, ,) (NP (NP (DT a) (NN member)) (PP (IN of) (NP (NP (DT the) (NN NtrC/NifA) (NN family)) (PP (IN of) (NP (NP (NNS proteins)) (SBAR (WHNP (WDT that)) (S (VP (VBP bind) (PP (TO to) (NP (NP (JJ enhancer-like) (NNS elements)) (, ,) (VP (VBN called) (S (NP (NP (JJ upstream) (NN activating) (NNS sequences)) (PRN (-LRB- -LRB-) (NP (NNS UAS)) (-RRB- -RRB-)))))))))))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (NP (NP (DT The) (NN _PROT2_) (NN gene)) (PP (IN of) (NP (FW Bacillus) (FW subtilis))) (, ,) (VP (VBG encoding) (NP (DT a) (JJ catabolic) (NN glutamate) (NN dehydrogenase))) (, ,)) (VP (VP (VBZ is) (VP (VBN transcribed) (PP (IN by) (NP (JJ _PROT_) (NN RNA) (NN polymerase))))) (CC and) (VP (VBZ requires) (PP (IN for) (NP (NP (PRP$ its) (NN expression) (NN _PROT1_)) (, ,) (NP (NP (DT a) (NN member)) (PP (IN of) (NP (NP (DT the) (NN NtrC/NifA) (NN family)) (PP (IN of) (NP (NP (NNS proteins)) (SBAR (WHNP (WDT that)) (S (VP (VBP bind) (PP (TO to) (NP (NP (JJ enhancer-like) (NNS elements)) (, ,) (VP (VBN called) (S (NP (NP (JJ upstream) (NN activating) (NNS sequences)) (PRN (-LRB- -LRB-) (NP (NNS UAS)) (-RRB- -RRB-)))))))))))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (PP (IN Unlike) (NP (NP (DT the) (NN case)) (PP (IN for) (NP (JJ other) (ADJP (NN _PROT1_) (-LRB- _PROT1_) (CD _PROT1_) (-RRB- _PROT1_) (JJ -dependent)) (NNS genes))))) (, ,) (NP (NN _PROT2_)) (VP (VBZ has) (NP (DT no) (NNS UAS)))) (: ;) (S (ADVP (RB instead)) (, ,) (NP (PRP$ its) (NN expression)) (VP (VBZ depends) (PP (IN on) (NP (NP (DT a) (NN sequence)) (ADJP (JJ located) (ADVP (NP (CD 1.5) (NNS kilobases)) (RB downstream) (PP (IN of) (NP (DT the) (NN rocG) (NN promoter))))))) (, ,) (PP (IN beyond) (NP (NP (DT the) (NN end)) (PP (IN of) (NP (DT the) (NN rocG) (NN coding) (NN region))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (PP (IN In) (NN addition) (TO to) (S (VP (VBG controlling) (NP (NP (NN transcription)) (PP (IN of) (NP (NN _PROT2_))))))) (, ,) (NP (NN _PROT1_)) (VP (VBZ appears) (S (VP (TO to) (VP (VB control) (NP (NP (NN expression)) (PP (IN of) (NP (NP (QP (IN at) (JJS least) (CD one)) (JJ other) (NN gene)) (VP (VBN required) (PP (IN for) (NP (NP (NN production)) (PP (IN of) (NP (NN CSF)))))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (NP (PRP We)) (VP (ADJP (JJ overproduced)) (CC and) (VP (VP (VBN purified) (NP (NP (NN sigma)) (PRN (-LRB- -LRB-) (NP (NN X)) (-RRB- -RRB-))) (PP (IN from) (NP (FW Escherichia) (FW coli)))) (CC and) (VP (VBP demonstrate) (SBAR (IN that) (S (NP (ADVP (FW in) (FW vitro)) (, ,) (NP (CC both) (NP (NP (NN _PROT1_)) (PRN (-LRB- _PROT1_) (NP (NN _PROT1_)) (-RRB- _PROT1_))) (CC and) (NP (NP (NN _PROT2_)) (PRN (-LRB- _PROT2_) (NP (NN _PROT2_)) (-RRB- _PROT2_)))) (NNS holoenzymes)) (VP (VBP recognize) (NP (NP (NN promoter) (NNS elements)) (PP (IN within) (NP (DT the) (NN _PROT_) (NN control) (NN region)))))))))) (. .))) |ET|
+1 |BT| (S1 (S (NP (PRP We)) (VP (ADJP (JJ overproduced)) (CC and) (VP (VP (VBN purified) (NP (NP (NN sigma)) (PRN (-LRB- -LRB-) (NP (NN X)) (-RRB- -RRB-))) (PP (IN from) (NP (FW Escherichia) (FW coli)))) (CC and) (VP (VBP demonstrate) (SBAR (IN that) (S (NP (ADVP (FW in) (FW vitro)) (, ,) (NP (CC both) (NP (NP (NN _PROT1_)) (PRN (-LRB- _PROT1_) (NP (NN _PROT1_)) (-RRB- _PROT1_))) (CC and) (NP (NP (NN _PROT_)) (PRN (-LRB- _PROT_) (NP (NN _PROT_)) (-RRB- _PROT_)))) (NNS holoenzymes)) (VP (VBP recognize) (NP (NP (NN promoter) (NNS elements)) (PP (IN within) (NP (DT the) (NN _PROT2_) (NN control) (NN region)))))))))) (. .))) |ET|
+1 |BT| (S1 (S (NP (PRP We)) (VP (ADJP (JJ overproduced)) (CC and) (VP (VP (VBN purified) (NP (NP (NN sigma)) (PRN (-LRB- -LRB-) (NP (NN X)) (-RRB- -RRB-))) (PP (IN from) (NP (FW Escherichia) (FW coli)))) (CC and) (VP (VBP demonstrate) (SBAR (IN that) (S (NP (ADVP (FW in) (FW vitro)) (, ,) (NP (CC both) (NP (NP (NN _PROT1_)) (PRN (-LRB- _PROT1_) (NP (NN _PROT1_)) (-RRB- _PROT1_))) (CC and) (NP (NP (NN _PROT_)) (PRN (-LRB- _PROT_) (NP (NN _PROT_)) (-RRB- _PROT_)))) (NNS holoenzymes)) (VP (VBP recognize) (NP (NP (NN promoter) (NNS elements)) (PP (IN within) (NP (DT the) (NN _PROT2_) (NN control) (NN region)))))))))) (. .))) |ET|
+1 |BT| (S1 (S (NP (PRP We)) (VP (ADJP (JJ overproduced)) (CC and) (VP (VP (VBN purified) (NP (NP (NN sigma)) (PRN (-LRB- -LRB-) (NP (NN X)) (-RRB- -RRB-))) (PP (IN from) (NP (FW Escherichia) (FW coli)))) (CC and) (VP (VBP demonstrate) (SBAR (IN that) (S (NP (ADVP (FW in) (FW vitro)) (, ,) (NP (CC both) (NP (NP (NN _PROT_)) (PRN (-LRB- _PROT_) (NP (NN _PROT_)) (-RRB- _PROT_))) (CC and) (NP (NP (NN _PROT1_)) (PRN (-LRB- _PROT1_) (NP (NN _PROT1_)) (-RRB- _PROT1_)))) (NNS holoenzymes)) (VP (VBP recognize) (NP (NP (NN promoter) (NNS elements)) (PP (IN within) (NP (DT the) (NN _PROT2_) (NN control) (NN region)))))))))) (. .))) |ET|
+1 |BT| (S1 (S (NP (PRP We)) (VP (ADJP (JJ overproduced)) (CC and) (VP (VP (VBN purified) (NP (NP (NN sigma)) (PRN (-LRB- -LRB-) (NP (NN X)) (-RRB- -RRB-))) (PP (IN from) (NP (FW Escherichia) (FW coli)))) (CC and) (VP (VBP demonstrate) (SBAR (IN that) (S (NP (ADVP (FW in) (FW vitro)) (, ,) (NP (CC both) (NP (NP (NN _PROT_)) (PRN (-LRB- _PROT_) (NP (NN _PROT_)) (-RRB- _PROT_))) (CC and) (NP (NP (NN _PROT1_)) (PRN (-LRB- _PROT1_) (NP (NN _PROT1_)) (-RRB- _PROT1_)))) (NNS holoenzymes)) (VP (VBP recognize) (NP (NP (NN promoter) (NNS elements)) (PP (IN within) (NP (DT the) (NN _PROT2_) (NN control) (NN region)))))))))) (. .))) |ET|
-1 |BT| (S1 (S (NP (PRP We)) (VP (ADJP (JJ overproduced)) (CC and) (VP (VP (VBN purified) (NP (NP (NN sigma)) (PRN (-LRB- -LRB-) (NP (NN X)) (-RRB- -RRB-))) (PP (IN from) (NP (FW Escherichia) (FW coli)))) (CC and) (VP (VBP demonstrate) (SBAR (IN that) (S (NP (ADVP (FW in) (FW vitro)) (, ,) (NP (CC both) (NP (NP (NN _PROT_)) (PRN (-LRB- _PROT_) (NP (NN _PROT_)) (-RRB- _PROT_))) (CC and) (NP (NP (NN _PROT_)) (PRN (-LRB- _PROT_) (NP (NN _PROT_)) (-RRB- _PROT_)))) (NNS holoenzymes)) (VP (VBP recognize) (NP (NP (NN promoter) (NNS elements)) (PP (IN within) (NP (DT the) (NN _PROT1_AND_PROT2_) (NN control) (NN region)))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (PP (IN In) (NP (DT that) (NN respect))) (NP (NN _PROT_)) (VP (VBZ is) (ADJP (JJ similar) (PP (TO to) (NP (NP (DT the) (ADJP (RB previously) (VBN described)) (NN gene) (NN _PROT2_)) (SBAR (WHNP (WDT which)) (S (VP (VBZ is) (ADVP (RB also)) (NP (NP (DT a) (NN member)) (PP (IN of) (NP (DT the) (NN _PROT1_) (NN regulon)))))))))))) (. .))) |ET|
+1 |BT| (S1 (S (S (PP (IN In) (NP (DT that) (NN respect))) (NP (NN _PROT2_)) (VP (VBZ is) (ADJP (JJ similar) (PP (TO to) (NP (NP (DT the) (ADJP (RB previously) (VBN described)) (NN gene) (NN _PROT_)) (SBAR (WHNP (WDT which)) (S (VP (VBZ is) (ADVP (RB also)) (NP (NP (DT a) (NN member)) (PP (IN of) (NP (DT the) (NN _PROT1_) (NN regulon)))))))))))) (. .))) |ET|
-1 |BT| (S1 (S (S (PP (IN In) (NP (DT that) (NN respect))) (NP (NN _PROT2_)) (VP (VBZ is) (ADJP (JJ similar) (PP (TO to) (NP (NP (DT the) (ADJP (RB previously) (VBN described)) (NN gene) (NN _PROT1_)) (SBAR (WHNP (WDT which)) (S (VP (VBZ is) (ADVP (RB also)) (NP (NP (DT a) (NN member)) (PP (IN of) (NP (DT the) (NN _PROT_) (NN regulon)))))))))))) (. .))) |ET|
