Humboldt-Universität zu Berlin - Mathematisch-Naturwissenschaftliche Fakultät - Wissensmanagement in der Bioinformatik

Wissensmanagement in der Bioinformatik

Prof. Dr. Ulf Leser




  • 05.01.2022: Im SFB FONDA ist eine Studentische Hilfskraftstelle zum nächstmöglichen Zeitpunkt zu besetzen.
  • 11.11.2021: Our WBI team achieved the 1st rank in the BC7 DrugProt competition for extracting drug - protein associations from scientific articles - among 30 participating teams. Congratulations to Leon, Mario, Sam, Fabio, and Christoph.
  • 05.10.2021: Unser Lehrprogramm für das Wintersemester 2021 / 2022 ist online.
  • 22.09.21: Our poster on "Transcriptomic deconvolution of neuroendocrine neoplasms predicts clinically relevant characteristics" by Raik Otto et al. won the 1st price at the eMED conference on Systems Medicine.
  • 16.03.2021: Our contribution to the BioNLP 2021 shared task on Question Summarization achieved a superb second position among 23 submissions. Congratulations especially to Mario and Leon.
  • 29.05.2020: The German Research Council has approved funding of the Collaborative Research Center (CRC) 1404 "FONDA - Foundations of Workflows for Large-Scale Scientific Data Analysis" (see press release.


Für Studenten


Science Communications


  • Running projects
  • Finished projects
  • Software and downloads
  • Finished dissertations in the group
  • All publications; latest:
    • Ferreira da Silva et al. A Community Roadmap for Scientific Workflows Research and Development, WORKS
    • Weber et al. Humboldt@DrugProt: Chemical-Protein Relation Extraction with Pretrained Transformers and Entity Descriptions, BioCreative 7
    • Leser et al.: The Collaborative Research Center FONDA, DASP
    • Weber et al. Extend, don’t rebuild: Phrasing conditional graph modification as autoregressive sequence labelling, EMNLP