Knowledge Management in Bioinformatics

Prof. Dr. Ulf Leser

News

• 02.09.2011. Our Ensembl-Method to the extraction of drug-drug interactions in texts ranked first in the 2011 DDI challenge.
• 1.11.2010 First release of PETER, a novel algorithm for fast similarity search and similarity joins on genomic sequences.
• 1.2.2011 Recently funded projects
  • CellFinder on building a repository of curated information on stem cell lines (our subproject: knowledge management)
  • Research Unit Stratosphere on scalable information management on cloud platforms (our subproject: Scalable information extraction)
  • Virtual Liver on Systems Biology of Human Liver Cells (our subproject: curator support)
  • Graduate School SOAMED on Service-Oriented Architectures in Medical Applications

 

Quicklinks

• Running projects
• Finished projects
• Software and downloads
• Finished dissertations
• Talks and invitations
• All papers, most recent papers:
  • Koschmieder et al., Tools for Managing and Analyzing Microarray Data, Briefings in Bioinformatics
  • Jaeger et al. Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction, BMC Genomics
  • Cohen-Boulakia & Leser. Next Generation Data Integration for the Life Sciences (Tutorial), ICDE 2011
  • Kabisch et al., Deep Web Integration with VisQI, VLDB 2010